I was wondering why my SSL via Cloudflare wasn't working. It looks like the Cloudflare plugin is missing this ability.

Hello Mike,
Thanks for contacting Cloudflare Support.
When signed up through a hosting partner, the partner needs to add CNAME records in order to generate an SSL certificate.
There is an API call to do that here: https://api.cloudflare.com/#ssl-veri...l-verification