We just did some test imports from a Cpanel (11) server. But it seems the .htaccess files
are not being copied out of the site export. Needless to say that most php applications need a .htaccess (mod_rewrite y0!) to work correct.
I dunno if it is also the case with imports from other systems. I will come to this one.
Also we see the same issue when importing Ensim/PPCP site exports.
Oh and another issue is that when importing a site export. It will create a index.html file if there is not a index.html already EVEN if there is a index.php already.
I just noticed something similar, unreleated to Interworx.
Doing a cp -a * /some/other/directory it copied everything but the .htaccess file. I assume I just needed to add in a switch to allow it to copy the “hidden/system” files.